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Repository tb_profiler_collate
Name: tb_profiler_collate
Owner: iuc
Synopsis: TB-Profiler Collate (from the TBProfiler tool suite)
TB-Profiler aligns reads to the H37Rv reference using bowtie2, BWA-MEM, BWA-MEM2 or minimap2 and then calls 
variants (by default using freebayes). These variants are then compared to a drug-resistance database to
predict drug resistance. For Illumina data the number of reads supporting the drug resistance variant
is also reported.
Content homepage: https://github.com/jodyphelan/TBProfiler
Development repository: https://github.com/galaxyproject/tools-iuc/tree/main/tools/tb-profiler
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/tb_profiler_collate/e9568d48ee11
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/tb_profiler_collate
Type: unrestricted
Revision: 1:e9568d48ee11
This revision can be installed: True
Times cloned / installed: 24

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Combines multiple TB-Profiler JSON reports into summary and variants reports 6.6.5+galaxy1 21.05

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis