| Beagle version 4.0 performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection.
Version 4 has multiple improvements: a standard format (Variant Call Format) for input and output files a powerful identity by descent detection algorithm: Refined IBD support for multi-threaded computation support for multi-allelic markers improved methods for phasing and genotype imputation elimination of temporary files use of a sliding window permit control memory use The next major release (version 4.1) will provide substantial improved haplotype phasing and genotype imputation. Look for version 4.1 to be released in April or May 2015. If you use Beagle in a published analysis, please report the program version and cite the following article: S R Browning and B L Browning (2007) Rapid and accurate haplotype phasing and missing data inference for whole genome association studies by use of localized haplotype clustering. Am J Hum Genet 81:1084-97. doi:10.1086/521987 |
hg clone https://toolshed.g2.bx.psu.edu/repos/bobbledavidson/beagle4_0
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Beagle version 4.0 performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. | 1.0.0 | any | |