Repository beagle4_0
Name: beagle4_0
Synopsis: Beagle version 4.0 performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection.
Beagle version 4.0 performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection.

Version 4 has multiple improvements:

a standard format (Variant Call Format) for input and output files
a powerful identity by descent detection algorithm: Refined IBD
support for multi-threaded computation
support for multi-allelic markers
improved methods for phasing and genotype imputation
elimination of temporary files
use of a sliding window permit control memory use
The next major release (version 4.1) will provide substantial improved haplotype phasing and genotype imputation. Look for version 4.1 to be released in April or May 2015.

If you use Beagle in a published analysis, please report the program version and cite the following article:

S R Browning and B L Browning (2007) Rapid and accurate haplotype phasing and missing data inference for whole genome association studies by use of localized haplotype clustering. Am J Hum Genet 81:1084-97. doi:10.1086/521987
Type: unrestricted
Revision: 4:b970ba62539e
This revision can be installed: True
Times cloned / installed: 250

Contents of this repository

Name Description Version Minimum Galaxy Version
Beagle version 4.0 performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. 1.0.0 any

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA