hg clone https://toolshed.g2.bx.psu.edu/repos/nicolas/oghma
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| shows scatterplot of a prediction vs true phenotype | 1.0.0 | any | |
| tool to evaluate aggregation accuracy | 1.0.0 | any | |
| use machine learning model to predict phenotype from genotype | 1.0.0 | any | |
| predict phenotype using a random forest approach | 1.0.1 | any | |
| beagle as a imputation tools, required phased reference file in VCF format | 1.0.0 | any | |
| compute R-squared value of a prediction vs true phenotype | 1.0.0 | any | |
| encode genotypes for further machine learning analysis | 1.0.0 | any | |
| beagle as a phasing tools | 1.0.0 | any | |
| predict phenotype using a LASSO approach | 1.0.0 | any | |
| predict phenotype by combining multiple classifiers | 1.0.0 | any | |
| create folds for classifiers evaluation through cross-validation | 1.0.0 | any | |
| perform QC on a dataset | 1.0.0 | any | |
| predict phenotype using a rrBLUP approach | 1.0.0 | any | |
| predict phenotype using a SVM approach | 1.0.0 | any | |
| evaluate results of classifiers prediction | 1.0.0 | any | |