Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository samtools_idxstats
Name: samtools_idxstats
Owner: devteam
Synopsis: BAM mapping statistics (using samtools idxstats)
Runs "samtools idxstats" to get mapping statistics from a sorted
index BAM file as a tabular output file.
Content homepage: http://www.htslib.org/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_idxstats
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/samtools_idxstats/87398ae795c7
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats
Type: unrestricted
Revision: 0:87398ae795c7
This revision can be installed: True
Times cloned / installed: 10901
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
samtools 1.2 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
tabulate mapping statistics for BAM dataset 2.0 any

Categories
SAM - Tools for manipulating alignments in the SAM format