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Repository commet
Name: commet
Owner: cmonjeau
Synopsis: Colibread / Commet : COmpare Multiple METagenomes
Directly from non-assembled reads, all against all comparisons are performed through an efficient indexing strategy. Then, results are stored as bit vectors, a compressed representation of read files, that can be used to further combine read subsets by common logical operations. Finally, COMMET computes a clusterization of metagenomic datasets, which is visualized by dendrogram and heatmaps.
Link to this repository: https://toolshed.g2.bx.psu.edu/view/cmonjeau/commet/9590778f5181
Type: unrestricted
Revision: 7:9590778f5181
This revision can be installed: True
Times cloned / installed: 295
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository ziptool revision e466f86a4520 owned by cmonjeau
Repository decompress_an_archive_and_merge revision 78d968479d52 owned by cmonjeau
Repository archive_datatypes revision ddf34b1d55c8 owned by cmonjeau
Repository package_readline_6_2 revision 5313ca2fbce6 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_cairo_1_12_14 revision cd2ed5717e38 owned by devteam (prior install required)
Repository package_pixman_0_32_4 revision 93cd8e03820c owned by devteam (prior install required)
Repository package_freetype_2_5_2 revision a65217367e4a owned by devteam (prior install required)
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_fontconfig_2_11_1 revision d88d844df0cb owned by iuc (prior install required)
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository archive_datatypes revision ddf34b1d55c8 owned by cmonjeau
Repository package_pixman_0_32_4 revision 93cd8e03820c owned by devteam (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_freetype_2_5_2 revision a65217367e4a owned by devteam (prior install required)
Repository package_fontconfig_2_11_1 revision d88d844df0cb owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_libxml2_2_9_1 revision 45b16a3ab504 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_commet_24_07_14 revision 741836b9e2c5 owned by cmonjeau (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
R 3.1.2 package
commet 24.7.14 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
COmpare Multiple METagenomes 24.7.14 any

Categories
Metagenomics - Tools enabling the study of metagenomes
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis