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Repository snp_sites
Name: snp_sites
Owner: iuc
Synopsis: Finds SNP sites from a multi-FASTA alignment file
SNP-sites can rapidly extract SNPs from a multi-FASTA alignment using modest resources and
can output results in multiple formats for downstream analysis. SNPs can be extracted from
a 8.3 GB alignment file (1,842 taxa, 22,618 sites) in 267 seconds using 59 MB of RAM and
1 CPU core, making it feasible to run on modest computers. SNP-sites is implemented in C
and is available under the open source license GNU GPL version 3.
Content homepage: https://github.com/sanger-pathogens/snp-sites
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/snp-sites
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/snp_sites/5804f786060d
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/snp_sites
Type: unrestricted
Revision: 1:5804f786060d
This revision can be installed: True
Times cloned / installed: 482

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
from a multi-FASTA alignment file 2.5.1+galaxy0 16.01

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA