| This script converts read group tracking files produced by Cuffdiff into a format useful
for importing into other programs. This works with the isoforms, genes, cds, and tss_groups read group tracking files generated by Cuffdiff. It reads in a Cuffdiff read_group_tracking file and prints out a tab-delimited file with the columns: featureID, group1-sample1 fpkm, group1-sample2 fpkm, group2-sample1 fpkm, .... By default the FPKM values are extracted and printed, but any other column in the file can be extracted if desired. |
hg clone https://toolshed.g2.bx.psu.edu/repos/jgarbe/rgttable
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Generate FPKM tables from cuffdiff read_group_tracking files. | 1.0 | any | |