Repository ctat_rsem_align_and_estimate_abundance
Name: ctat_rsem_align_and_estimate_abundance
Owner: trinity_ctat
Synopsis: Align and Estimate Abundance generates transcript quantification for genes and isoforms using RSEM.
Align and Estimate Abundance generates transcript quantification for genes and isoforms using RSEM. RSEM enables accurate transcript quantification for species without sequenced genomes.
Content homepage: https://github.com/NCIP/Trinity_CTAT_galaxy/wiki
Development repository: https://github.com/NCIP/Trinity_CTAT_galaxy
Link to this repository: https://toolshed.g2.bx.psu.edu/view/trinity_ctat/ctat_rsem_align_and_estimate_abundance/8605f8570c77
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/trinity_ctat/ctat_rsem_align_and_estimate_abundance
Type: unrestricted
Revision: 0:8605f8570c77
This revision can be installed: True
Times cloned / installed: 295

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
run RSEM to estimate transcript abundances 1.0.0 17.05

Categories
Assembly - Tools for working with assemblies
RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis