| The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyze high-throughput sequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size. https://www.broadinstitute.org/gatk/about/ Repository-Maintainer: Alexander Vowinkel Repository-Development: https://github.com/kaktus42/galaxytools |
hg clone https://toolshed.g2.bx.psu.edu/repos/avowinkel/gatk
| Name | Version | Type | |
|---|---|---|---|
| package_r_for_gatk_3_4_0 | 3.1.2.1 | package | |
| GATK_PATH | set_environment | ||
| GATK_SITE_OPTIONS | set_environment | ||
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| tool collection Version 3.4-0 | 3.4-0.d9 | any | |