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Repository gatk4_mutect2
Name: gatk4_mutect2
Owner: iuc
Synopsis: A Galaxy wrapper for Mutect2 from GATK
MuTect2 is a somatic SNP and indel caller that combines the DREAM 
challenge-winning somatic genotyping engine of the original MuTect
with the assembly-based machinery of HaplotypeCaller.
Content homepage: https://software.broadinstitute.org/gatk/gatk4
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/gatk4
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/gatk4_mutect2/fb0bb7174530
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/gatk4_mutect2
Type: unrestricted
Revision: 6:fb0bb7174530
This revision can be installed: True
Times cloned / installed: 660

Contents of this repository

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Name Description Version Minimum Galaxy Version
- Call somatic SNVs and indels via local assembly of haplotypes 4.1.7.0+galaxy1+galaxy1 18.05

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA