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Repository megahit
Name: megahit
Owner: iuc
Synopsis: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph.
MEGAHIT is a single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly. MEGAHIT can optionally utilize a CUDA-enabled GPU to accelerate its SdBG contstruction. The GPU-accelerated version of MEGAHIT has been tested on NVIDIA GTX680 (4G memory) and Tesla K40c (12G memory) with CUDA 5.5, 6.0 and 6.5. MEGAHIT v1.0 or greater also supports IBM Power PC and has been tested on IBM POWER8.
Content homepage: https://github.com/voutcn/megahit
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/megahit
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/megahit/a96f3ad4e0d8
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/megahit
Type: unrestricted
Revision: 7:a96f3ad4e0d8
This revision can be installed: True
Times cloned / installed: 1075

Contents of this repository

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Name Description Version Minimum Galaxy Version
for metagenomics assembly 1.2.9+galaxy1 16.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Assembly - Tools for working with assemblies
Metagenomics - Tools enabling the study of metagenomes