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Repository gandalfworkflow
Name: gandalfworkflow
Owner: urgi-team
Synopsis: gandalf Workflow
workflows developped for the Gandalf project
Link to this repository: https://toolshed.g2.bx.psu.edu/view/urgi-team/gandalfworkflow/1fbe965e22e2
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/urgi-team/gandalfworkflow
Type: unrestricted
Revision: 9:1fbe965e22e2
This revision can be installed: True
Times cloned / installed: 296
Dependencies of this repository

Repository dependencies - Gandalf worflow needed repository
Repository package_bwa_0_7_10_039ea20639 revision 5b9aca1e1c07 owned by devteam
Repository package_samtools_1_2 revision f6ae3ba3f3c1 owned by iuc
Repository package_picard_1_136 revision 3e9c24e5325b owned by devteam
Repository package_samtools_0_1_19 revision 95d2c4aefb5f owned by devteam
Repository package_picard_1_126_0 revision b455d70e90b8 owned by devteam
Repository package_samtools_0_1_19 revision 95d2c4aefb5f owned by devteam
Repository data_manager_sam_fasta_index_builder revision 2a1ac1abc3f7 owned by devteam
Repository bam_to_sam revision c09a20532957 owned by devteam
Repository pileup_interval revision 0b4181be05c8 owned by devteam
Repository sam_to_bam revision c73bf16b45df owned by devteam
Repository samtools_flagstat revision a3dd61e7bec1 owned by devteam
Repository samtools_phase revision cba1944e3ed0 owned by devteam
Repository samtools_rmdup revision fe83e6f8e65e owned by devteam
Repository samtools_mpileup revision 973fea5b4bdf owned by devteam
Repository samtools_slice_bam revision 74a8d2d60258 owned by devteam
Repository package_samtools_0_1_19 revision 95d2c4aefb5f owned by devteam
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_samtools_0_1_19 revision 95d2c4aefb5f owned by devteam
Repository package_samtools_0_1_19 revision 95d2c4aefb5f owned by devteam
Repository package_samtools_0_1_19 revision 95d2c4aefb5f owned by devteam
Repository package_samtools_0_1_19 revision 95d2c4aefb5f owned by devteam
Repository package_samtools_0_1_19 revision 95d2c4aefb5f owned by devteam
Repository package_samtools_0_1_19 revision 95d2c4aefb5f owned by devteam
Repository package_samtools_0_1_19 revision 95d2c4aefb5f owned by devteam
Repository package_samtools_0_1_19 revision 95d2c4aefb5f owned by devteam
Repository vcfgandalftools revision 1fd1f727c330 owned by urgi-team
Repository mdust revision 79feb4eb7832 owned by urgi-team

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA