Repository macs
Name: macs
Owner: devteam
Synopsis: Model-based Analysis of ChIP-Seq
With the improvement of sequencing techniques, chromatin immunoprecipitation
followed by high throughput sequencing (ChIP-Seq) is getting popular to study genome-wide
protein-DNA interactions. To address the lack of powerful ChIP-Seq analysis method,
we present a novel algorithm, named Model-based Analysis of ChIP-Seq (MACS), for
identifying transcript factor binding sites. MACS captures the influence of genome
complexity to evaluate the significance of enriched ChIP regions, and MACS improves
the spatial resolution of binding sites through combining the information of both
sequencing tag position and orientation. MACS can be easily used for ChIP-Seq data
alone, or with control sample with the increase of specificity.
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/macs
Type: unrestricted
Revision: 3:e5f3bfba6812
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Dependencies of this repository

Repository package_macs_1_3_7_1 revision a7ea583a35d2 owned by devteam
Repository package_r_2_15_0 revision 6c34eaa82fed owned by devteam

Name Version Type
R 2.15.0 package
macs 1.3.7.1 package

Contents of this repository

Name Description Version Minimum Galaxy Version
Model-based Analysis of ChIP-Seq 1.0.1 16.04

Categories
ChIP-seq - Tools for analyzing and manipulating ChIP-seq data.