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Repository rgi
Name: rgi
Owner: card
Synopsis: Resistance Gene Identifier (RGI) predicts resistome(s) from protein or nucleotide data based on homology and SNP models
This tool provides a preliminary annotation of your DNA sequence(s) based upon the data available in CARD. Hits to genes tagged with Antibiotic Resistance ontology terms will be highlighted. As CARD expands to include more pathogens, genomes, plasmids, and ontology terms this tool will grow increasingly powerful in providing first-pass detection of antibiotic resistance associated genes.
Development repository: https://github.com/arpcard/rgi
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/card/rgi
Type: unrestricted
Revision: 5:84bd24ac33fd
This revision can be installed: True
Times cloned / installed: 653

Repository README files - may contain important installation or license information

RGI wrapper

This wrapper is used to run Resistance Gene Identifier (RGI) on galaxy environment.

This tool is used together with data manager for RGI: rgi_database_builder.

Contents of this repository

Name Description Version Minimum Galaxy Version
This tool predicts resistome(s) from protein or nucleotide data based on homology and SNP models. 5.2.1 18.09
Download and build the CARD database for RGI 1.2.0 18.09

Name Version Data Tables
rgi_database_builder 1.2.0 rgi_databases

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis