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Repository xcms_merge
Name: xcms_merge
Owner: lecorguille
Synopsis: [Metabolomics][W4M][LC-MS] XCMS R Package - Preprocessing - Merge individual xcmsSet outputs
Filtration and Peak Identification using xcmsSet function from xcms R
package to preprocess LC/MS data for relative quantification and
statistical analysis
Part of the W4M project: http://workflow4metabolomics.org
XCMS: http://www.bioconductor.org/packages/release/bioc/html/xcms.html 
Content homepage: https://github.com/sneumann/xcms
Development repository: https://github.com/workflow4metabolomics/tools-metabolomics/
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/lecorguille/xcms_merge/5bd125a3f3b0
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_merge
Type: unrestricted
Revision: 14:5bd125a3f3b0
This revision can be installed: True
Times cloned / installed: 1110

Repository README files - may contain important installation or license information

Readme files
Changelog/News -------------- .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS **Version 3.12.0+galaxy* - 03/03/2020** - UPGRADE: upgrade the xcms version from 3.6.1 to 3.12.0 (see XCMS News_) **Version 3.6.1.0 - 03/09/2019** - UPGRADE: upgrade the xcms version from 3.4.4 to 3.6.1 (see XCMS News_) **Version 3.4.4.0 - 08/02/2019** - UPGRADE: upgrade the xcms version from 3.0.0 to 3.4.4 (see XCMS News_) **Version 3.0.0.0 - 08/03/2018** - UPGRADE: upgrade the xcms version from 1.46.0 to 3.0.0. So refactoring of a lot of underlining codes and methods - IMPROVMENT: a new dedicated tool "xcms plot chromatogram" will allow you to get TIC and BPI of your raw data. - IMPROVMENT: the tool will now generate a sampleMetadata file if any was provided. It will be useful to add some further information for the normalization and statistics steps. **Version 1.0.1 - 13/02/2017** - IMPROVMENT: the tool will now raise an error if a sample isn't describe in the sampleMetadata file **Version 1.0.0 - 03/02/2017** - NEW: a new tool to merge individual xcmsSet outputs to be used by xcms.group
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository no_unzip_datatype revision 7800ba9a4c1e owned by lecorguille
Repository rdata_xcms_datatypes revision 544f6d2329ac owned by lecorguille

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Merge xcms findChromPeaks RData into a unique file to be used by group 3.12.0+galaxy0 16.01

Categories
Metabolomics - Tools for use in the study of Metabolomics