Repository Actions
View repository
View change log
Browse repository tip files
Export this revision
Download as a .tar.gz file
Download as a .tar.bz2 file
Download as a zip file
Repository
suite_trinity
Name:
suite_trinity
Owner:
iuc
Synopsis:
Trinity tools to assemble transcript sequences from Illumina RNA-Seq data.
Detailed description:
Trinity represents a method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data
https://github.com/trinityrnaseq/trinityrnaseq
Content homepage:
https://github.com/trinityrnaseq/trinityrnaseq
Development repository:
https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity
Link to this repository:
https://toolshed.g2.bx.psu.edu/view/iuc/suite_trinity/acc2f30cdfa8
Clone this repository:
hg clone
https://toolshed.g2.bx.psu.edu/repos/iuc/suite_trinity
Type:
repository_suite_definition
Revision:
30:acc2f30cdfa8
This revision can be installed:
True
Times cloned / installed:
1058
Dependencies of this repository
Repository dependencies
- Trinity tools to assemble transcript sequences from Illumina RNA-Seq data.
Repository
describe_samples
revision
3b36efd62b3e
owned by
iuc
Repository
trinity_run_de_analysis
revision
24e94d84adc9
owned by
iuc
Repository
trinity_align_and_estimate_abundance
revision
2fb4ee002432
owned by
iuc
Repository
trinity
revision
8f1c3df4dd49
owned by
iuc
Repository
trinity_abundance_estimates_to_matrix
revision
ba3720d7e68b
owned by
iuc
Repository
trinity_define_clusters_by_cutting_tree
revision
65e7dea767ea
owned by
iuc
Repository
trinity_stats
revision
b2ce45417d9e
owned by
iuc
Repository
trinity_gene_to_trans_map
revision
7c7fbf13aadd
owned by
iuc
Repository
trinity_analyze_diff_expr
revision
9ff3765e7172
owned by
iuc
Repository
trinity_samples_qccheck
revision
04bb8bb7c198
owned by
iuc
Repository
trinity_super_transcripts
revision
5c1fc038df6b
owned by
iuc
Repository
trinity_contig_exn50_statistic
revision
870ac06dff8e
owned by
iuc
Repository
trinity_filter_low_expr_transcripts
revision
a35cba31d904
owned by
iuc
Categories
Transcriptomics
- Tools for use in the study of Transcriptomics.
RNA
- Utilities for RNA