Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository tximport
Name: tximport
Owner: iuc
Synopsis: Wrapper for the Bioconductor package tximport
Imports transcript-level abundance, estimated counts and transcript lengths,
and summarizes into matrices for use with downstream statistical analysis
packages such as edgeR, DESeq2, limma-voom. Average transcript length,
weighted by sample-specific transcript abundance estimates, is provided as a
matrix which can be used as an offset for different expression of gene-level
counts.
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/tximport
Type: unrestricted
Revision: 1:2c338211927c
This revision can be installed: True
Times cloned / installed: 156

Contents of this repository

Name Description Version Minimum Galaxy Version
Summarize transcript-level estimates for gene-level analysis 1.20.0 20.09

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.