This repository has been marked as deprecated, so some tool shed features may be restricted.
Repository riboseqr_wrapper
Name: riboseqr_wrapper
Owner: biotechcoder
Synopsis: Wrapper for riboSeqR (R package)
riboSeqR is an R/Bioconductor package for the analysis of sequencing data from ribosome profiling experiments. This tool is a Galaxy wrapper for riboSeqR.
Content homepage: http://ribogalaxy.ucc.ie
Development repository: https://bitbucket.org/biotechcoder/riboseqr_wrapper
Link to this repository: https://toolshed.g2.bx.psu.edu/view/biotechcoder/riboseqr_wrapper/e01de823e919
Type: unrestricted
Revision: 0:e01de823e919
This revision can be installed: True
Times cloned / installed: 5

Contents of this repository

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Name Description Version Minimum Galaxy Version
(Step 2) Plot triplet periodicity for different read lengths. 0.4.0 any
(Step 1) Prepare alignment file (SAM format, Ribo-Seq or RNA-Seq alignments) for riboSeqR analysis. 0.4.0 any
(Step 4) Plot Ribosome profile using riboSeqR. 0.4.0 any
(Step 3) Metagene analysis using riboSeqR. 0.4.0 any

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.