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Repository samtools_coverage
Name: samtools_coverage
Owner: iuc
Synopsis: computes the depth at each position or region
This tool uses the SAMtools toolkit to compute the depth at each position or region.
Content homepage: http://www.htslib.org/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/samtools_coverage/ddbd49b892e5
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/samtools_coverage
Type: unrestricted
Revision: 5:ddbd49b892e5
This revision can be installed: True
Times cloned / installed: 458

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Produces a histogram or table of coverage per chromosome 1.21+galaxy3 22.05

Categories
SAM - Tools for manipulating alignments in the SAM format
Convert Formats - Tools for converting data formats