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Repository cds_search
Name: cds_search
Owner: abims-sbr
Synopsis: CDS search and indels deletion
This tool works with the outputs of the tool blastalign and proceeds to look for coding sequences on each sequence of the alignment and to remove all the indels. Outputs can be either nucleic or proteic sequences.
Development repository: https://github.com/abims-sbr/adaptsearch
Link to this repository: https://toolshed.g2.bx.psu.edu/view/abims-sbr/cds_search/c79bdda8abfb
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/abims-sbr/cds_search
Type: unrestricted
Revision: 1:c79bdda8abfb
This revision can be installed: True
Times cloned / installed: 265

Repository README files - may contain important installation or license information

Readme files

Changelog

Version 2.0 - 05/07/2017

  • NEW: Replace the zip between tools by Dataset Collection

Version 1.0 - 13/04/2017

  • Add funtional test with planemo
  • planemo test with conda dependency for python
  • Scripts renamed + symlinks to the directory 'scripts'

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
ORF and CDS search 2.2.2 16.01

Categories
Phylogenetics - Tools for performing phylogenetic analysis
RNA - Utilities for RNA
Transcriptomics - Tools for use in the study of Transcriptomics.