Repository paqmir_create_mirna_references
Name: paqmir_create_mirna_references
Owner: smarthey
Synopsis: Prepares files containing hairpin and mature miRNAs that are necessary for the use of miRDeep2 software.
This tool is part of the workflow PAQmiR for the *Prediction Annotation and Quantification of miRNA with miRDeep2*
This tool will use the "species code" provided as parameter to identify the sequences belonging to the reference species in the mature and hairpin files passed as parameters.
Content homepage: https://forgemia.inra.fr/sylvain.marthey/paqmir
Development repository: https://forgemia.inra.fr/sylvain.marthey/paqmir
Link to this repository: https://toolshed.g2.bx.psu.edu/view/smarthey/paqmir_create_mirna_references/ee1381c5600c
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/smarthey/paqmir_create_mirna_references
Type: unrestricted
Revision: 1:ee1381c5600c
This revision can be installed: True
Times cloned / installed: 190

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
creates the microRNA reference files used by the miRDeep2 software 1.0.0 16.01

Categories
RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis