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Repository meme_fimo
Name: meme_fimo
Owner: iuc
Synopsis: FIMO tool from the meme package
The MEME Suite supports motif-based analysis of DNA, RNA and protein sequences.  It provides motif
discovery algorithms using both probabilistic (MEME) and discrete models (MEME), which have complementary
strengths.  It also allows discovery of motifs with arbitrary insertions and deletions (GLAM2).  In
addition to motif discovery, the MEME Suite provides tools for scanning sequences for matches to motifs
(FIMO, MAST and GLAM2Scan), scanning for clusters of motifs (MCAST), comparing motifs to known motifs
(Tomtom), finding preferred spacings between motifs (SpaMo), predicting the biological roles of motifs
(GOMo), measuring the positional enrichment of sequences for known motifs (CentriMo), and analyzing
ChIP-seq and other large datasets (MEME-ChIP).  The MEME Suite is comprised of a collection of tools
that work together.
Content homepage: http://meme-suite.org/
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/meme_fimo
Type: unrestricted
Revision: 18:c5209f38700d
This revision can be installed: True
Times cloned / installed: 908

Contents of this repository

Name Description Version Minimum Galaxy Version
- Scan a set of sequences for motifs 5.4.1+galaxy0 16.01

Categories
ChIP-seq - Tools for analyzing and manipulating ChIP-seq data.