| This tool is a short Python script (using Biopython library functions) which divides a FASTA, FASTQ, or SFF file in two, those sequences which do or do not map according to given SAM/BAM file(s). Example uses include mapping of FASTQ reads against a known contaminant in order to remove reads prior to a de novo assembly. See https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_filter_by_mapping |
hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_mapping
| Repository package_samtools_0_1_19 revision c9bd782f5342 owned by iuc |
| Name | Version | Type | |
|---|---|---|---|
| samtools | 0.1.19 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| from SAM/BAM file | 0.0.8 | 16.01 | |