| Using the common read name suffix conventions, it divides a FASTQ file into paired reads, and orphan or single reads. The input file should be a valid FASTQ file which has been sorted so that any partner forward+reverse reads are consecutive. The output files all preserve this sort order. Pairings are recognised based on standard name suffices. Any reads where the forward/reverse naming suffix used is not recognised are treated as orphan reads. The tool supports the old /1 and /2 convention used by Illumina, the new Illumina convention, the .f and .r convention, and the Sanger convention (see http://staden.sourceforge.net/manual/pregap4_unix_50.html for details). |
hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/fastq_paired_unpaired
| Repository package_galaxy_sequence_utils_1_0_1 revision c1ab450748ba owned by iuc |
| Name | Version | Type | |
|---|---|---|---|
| galaxy_sequence_utils | 1.0.1 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| using the read name suffixes | 0.1.5 | 16.01 | |