Repository bedtools_bedtobam
Name: bedtools_bedtobam
Owner: brenninc
Synopsis: Bed to Bam from bedtools with samtools sort at the end
Runs BedToBam and the sort as galaxy no longer accepts unsorted bam files.

Based on https://toolshed.g2.bx.psu.edu/view/iuc/bedtools/f8b7dc21b4ee
Development repository: https://github.com/Christian-B/galaxy_shedtools/tree/master/bedtools
Link to this repository: https://toolshed.g2.bx.psu.edu/view/brenninc/bedtools_bedtobam/a993f4a9aeaa
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/brenninc/bedtools_bedtobam
Type: unrestricted
Revision: 0:a993f4a9aeaa
This revision can be installed: True
Times cloned / installed: 207
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_bedtools_2_24 revision 3416a1d4a582 owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bedtools 2.24 package
samtools 1.2 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
converter 2.24.0 any

Categories
Convert Formats - Tools for converting data formats