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Repository dc_genotyper
Name: dc_genotyper
Owner: geert-vandeweyer
Synopsis: DC_genotyper is a genotyper for high-ploidy very deep data
Deep_Coverag_Genotyper is a genotyper aimed at finding SNPs in high-ploidy (or pooled) samples sequenced at very high depth in a targeted region. 
Link to this repository: https://toolshed.g2.bx.psu.edu/view/geert-vandeweyer/dc_genotyper/ffebbccb694a
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/geert-vandeweyer/dc_genotyper
Type: unrestricted
Revision: 22:ffebbccb694a
This revision can be installed: True
Times cloned / installed: 297
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_readline_6_2 revision 5313ca2fbce6 owned by iuc (prior install required)
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_samtools_0_1_19 revision 95d2c4aefb5f owned by devteam
Repository package_perl_threading revision 4cb7824de4d9 owned by geert-vandeweyer
Repository package_tabix_0_2_6 revision 389d2376b60b owned by iuc
Repository package_blat_server revision 5920144e9e9b owned by jjohnson
Repository package_igvtools_2_3_32 revision 3c087cee3b8f owned by geert-vandeweyer

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
R_3_0_2 3.0.2 package
blat_server latest package
igvtools 2.3.32 package
perl_module_Thread_Queue 3.07 package
perl_module_threads 2.02 package
perl_module_threads_shared 1.48 package
samtools 0.1.19 package
tabix 0.2.6 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
0.0.2 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA