| Suite of custom tools to enable data processing and protein inference for labeled and label-free Mass Spectrometry proteomics data. Can be used in combination with prims_masscomb. |
hg clone https://toolshed.g2.bx.psu.edu/repos/pieterlukasse/prims_proteomics
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Converts MS/MS data in CSV format to APML format | 1.0.2 | any | |
| 'no alignment' (alignment-free) peptide quantification | 0.0.3 | any | |
| Identifies in-source decay peptides and corrects protein assignments | 0.0.1 | any | |
| Filters annotations based MS/MS peptide identification and annotation quality measures | 1.0.4 | any | |
| Protein Inference by Peptide Quantification patterns | 1.0.3 | any | |
| Matches MS and MS/MS results | 1.0.3 | any | |
| Labeled ms/ms data pre-processing for Protein Quantification (and Inference) pipelines | 1.0.2 | any | |
| Converts Progenesis aligned feature lists in CSV format to APML | 1.0.2 | any | |