Repository lookup
Name: lookup
Owner: nanettec
Synopsis: Lookup table for cM intervals
### This is the first tool in the eQTL backend pipeline: 
lookup, classification, frequency, sliding window frequency, hotspots, GO enrichment

Link to the workflow (for import into Galaxy): http://chewbacca.bi.up.ac.za:8080/u/nanette/w/back-end-workflow-2

The information from the Markers file and the QTL Cartographer Z file, are combined to proportionally estimate a base pair position at each “QTL Cartographer bin” (e.g. 2 cM intervals).

The Lookup file can then serve as a lookup table to convert between base pair and centimorgan positions.
Type: unrestricted
Revision: 1:d0a296afe83a
This revision can be installed: True
Times cloned / installed: 250

Contents of this repository

Name Description Version Minimum Galaxy Version
for 2cM intervals 5.0.0 any

Categories
Genome-Wide Association Study - Utilities to support Genome-wide association studies