| http://github.com/crs4/seal |
hg clone https://toolshed.g2.bx.psu.edu/repos/crs4/seal_galaxy
| Repository package_pydoop_0_11 revision 2055590ae81c owned by crs4 (prior install required) |
| Repository package_openssl_1_0 revision d0fd342a016b owned by iuc (prior install required) |
| Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required) |
| Repository package_perl_5_18 revision 35f117d7396b owned by iuc (prior install required) |
| Repository package_gnu_coreutils_8_25 revision a177f177d42f owned by iuc (prior install required) |
| Name | Version | Type | |
|---|---|---|---|
| hadoop-galaxy | 0.1.3 | package | |
| seal | 13986416aa79561bd0102cb7ccc1e0668ac9f0a4 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Convert qseq or fastq files to prq on Hadoop | 13986416aa79561bd0102cb7ccc1e0668ac9f0a4 | any | |
| Map reads on Hadoop | 13986416aa79561bd0102cb7ccc1e0668ac9f0a4 | any | |
| Convert Illumina bcl files to qseq on Hadoop | 13986416aa79561bd0102cb7ccc1e0668ac9f0a4 | any | |
| Calculate a base quality recalibration table on Hadoop. | 13986416aa79561bd0102cb7ccc1e0668ac9f0a4 | any | |
| Generate a SAM header for the given reference | 13986416aa79561bd0102cb7ccc1e0668ac9f0a4 | any | |
| Merge a pathset of part-files of alignments into a single well-formatted SAM file | 13986416aa79561bd0102cb7ccc1e0668ac9f0a4 | any | |
| Sort reads with Hadoop | 13986416aa79561bd0102cb7ccc1e0668ac9f0a4 | any | |
| Demultiplex Illumina runs on Hadoop | 13986416aa79561bd0102cb7ccc1e0668ac9f0a4 | any | |