| Mauve is a system for constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignments provide a basis for research into comparative genomics and the study of genome-wide evolutionary dynamics. Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the lengths of sequences being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours. However, the current algorithm’s compute time (progressiveMauve) scales cubically in the number of genomes to align, making it unsuitable for datasets containing more than 50-100 bacterial genomes. http://darlinglab.org/mauve/ |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/progressivemauve
| Name | Version | Type | |
|---|---|---|---|
| bcbiogff | 0.6.2 | package | |
| biopython | 1.65 | package | |
| progressivemauve | 2.4.0 | package | |
| python | 2.7 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| 2.4.0.0 | any | ||
| constructs multiple genome alignments | 2.4.0.0 | any | |