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Repository stringtie
Name: stringtie
Owner: iuc
Synopsis: StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.
StringTie is a fast and highly efficient assembler of RNA-Seq alignments
into potential transcripts. It is primarily a genome-guided transcriptome assembler,
although it can borrow algorithmic techniques from de novo genome assembly to help
with transcript assembly. Its input can include not only the spliced read alignments
used by reference-based assemblers, but also longer contigs that were assembled
de novo from unambiguous, non-branching parts of a transcript.
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/stringtie
Type: unrestricted
Revision: 18:258d696dbd7e
This revision can be installed: True
Times cloned / installed: 2762

Contents of this repository

Name Description Version Minimum Galaxy Version
transcript assembly and quantification 2.1.7 16.01
transcripts 2.1.7 16.01

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.