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Repository stringtie
Name: stringtie
Owner: iuc
Synopsis: StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.
StringTie is a fast and highly efficient assembler of RNA-Seq alignments
into potential transcripts. It is primarily a genome-guided transcriptome assembler,
although it can borrow algorithmic techniques from de novo genome assembly to help
with transcript assembly. Its input can include not only the spliced read alignments
used by reference-based assemblers, but also longer contigs that were assembled
de novo from unambiguous, non-branching parts of a transcript.
Content homepage: http://ccb.jhu.edu/software/stringtie/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/stringtie/cef79931dda5
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/stringtie
Type: unrestricted
Revision: 20:cef79931dda5
This revision can be installed: True
Times cloned / installed: 3744

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
transcript assembly and quantification 2.1.7+galaxy1 16.01
transcripts 2.1.7+galaxy1 16.01

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.