This repository has been marked as deprecated, so some tool shed features may be restricted.
Repository blastx_to_scaffold
Name: blastx_to_scaffold
Owner: drosofff
Synopsis: Generate DNA scaffold from blastx alignment of Contigs
This tool start from DNA contigs that aligned to a subject protein sequence through blastx.
The contigs must be provided in fasta format. The blastx output must be tabular, the 12 standard column plus column 13 with the length of the blastx subject.
The final scaffold is a DNA sequence.
Sequences of the subject protein which were not aligned to the contigs are replaced by Ns in this scaffold.
Content homepage: http://artbio.fr
Development repository: https://github.com/ARTbio/tools-artbio/tree/master/tools/blastx_to_scaffold
Link to this repository: https://toolshed.g2.bx.psu.edu/view/drosofff/blastx_to_scaffold/940c0c669e96
Type: unrestricted
Revision: 1:940c0c669e96
This revision can be installed: True
Times cloned / installed: 322

Contents of this repository

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Name Description Version Minimum Galaxy Version
Generate DNA scaffold from blastx alignment of Contigs 0.9.0 any

Categories
RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Assembly - Tools for working with assemblies