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Repository seq_filter_by_id
Owner: peterjc
Synopsis: Filter sequences by ID
Divide a FASTA, FASTQ or SFF file in two, those sequences with or without an ID present
in the specified column(s) of a tabular file.

Example uses include filtering based on search results from a tool like NCBI BLAST,
TMHMM, SignalP, or a read mapper. i.e. Split your sequences according to whether
or not they have a BLAST match, transmembrane domain, signal peptide, or map to
the reference sequence.

This tool is a short Python script (using Biopython and Galaxy library functions).
It requires Biopython to be installed.

Note this tool replaces my three previously separate tools for FASTA, FASTA and
SFF filtering by ID.
Type: unrestricted
Revision: 9:141612f8c3e3
This revision can be installed: True
Times cloned / installed: 4190
Dependencies of this repository

Repository package_numpy_1_9 revision 83d12e13dbbd owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_python_2_7 revision f761bd14343e owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
Repository package_bzlib_1_0 revision af4887e1f595 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision 944f93d45594 owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)
Repository package_gdbm_1_11 revision ed2537bccffc owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_libtool_2_4 revision 7f67694b167c owned by iuc (prior install required)

Name Version Type
biopython 1.67 package

Contents of this repository

Name Description Version Minimum Galaxy Version
from a tabular file 0.2.7 any

Categories
Fasta Manipulation - Tools for manipulating fasta data
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Text Manipulation - Tools for manipulating data