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Repository cuffdiff
Name: cuffdiff
Owner: devteam
Synopsis: Galaxy wrappers for the Cuffdiff tool.
Cuffdiff is part of the Cufflinks suite. Cuffdiff find significant changes in transcript
expression, splicing, and promoter use. Cuffdiff takes a GTF2/GFF3 file of transcripts
as input, along with two or more SAM files containing the fragment alignments for two or
more samples. It produces a number of output files that contain test results for changes
in expression at the level of transcripts, primary transcripts, and genes. It also tracks
changes in the relative abundance of transcripts sharing a common transcription start
site, and in the relative abundances of the primary transcripts of each gene. Tracking
the former allows one to see changes in splicing, and the latter lets one see changes
in relative promoter use within a gene.
Type: unrestricted
Revision: 17:43221aef70e2
This revision can be installed: True
Times cloned / installed: 7903

Contents of this repository

Name Description Version Minimum Galaxy Version
find significant changes in transcript expression, splicing, and promoter use 2.2.1.6 16.01

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.