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Repository filter_spades_repeats
Name: filter_spades_repeats
Owner: nml
Synopsis: Remove short and repeat contigs/scaffolds
Using the output of SPAdes (a fasta and a stats file, either from contigs or scaffolds), it filters the fasta files, discarding all sequences that are under a given length or under a calculated coverage. Repeated contigs are detected based on coverage.
Content homepage: https://github.com/phac-nml/galaxy_tools/
Development repository: https://github.com/phac-nml/galaxy_tools/
Link to this repository: https://toolshed.g2.bx.psu.edu/view/nml/filter_spades_repeats/0e3d2c8b1b23
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/nml/filter_spades_repeats
Type: unrestricted
Revision: 1:0e3d2c8b1b23
This revision can be installed: True
Times cloned / installed: 296

Contents of this repository

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Name Description Version Minimum Galaxy Version
Remove short and repeat contigs/scaffolds 1.0.1 16.01

Categories
Assembly - Tools for working with assemblies