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Repository lumpy_sv
Name: lumpy_sv
Owner: artbio
Synopsis: Find structural variations
This tool takes as an input a sorted bam alignment of paired-end sequencing reads.
It extracts discordant paired-end alignments and split-read alignments,
and generates a vcf file containing structural variation calls
Content homepage: http://artbio.fr
Development repository: https://github.com/ARTbio/tools-artbio/tree/master/tools/lumpy_sv
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/artbio/lumpy_sv/6ae3a402b9af
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/artbio/lumpy_sv
Type: unrestricted
Revision: 5:6ae3a402b9af
This revision can be installed: True
Times cloned / installed: 358

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
find structural variants 1.2.2 16.01

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA