This repository has been marked as deprecated, so some tool shed features may be restricted.
Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository lumpy_sv
Name: lumpy_sv
Owner: artbio
Synopsis: Find structural variations
This tool takes as an input a sorted bam alignment of paired-end sequencing reads.
It extracts discordant paired-end alignments and split-read alignments,
and generates a vcf file containing structural variation calls
Content homepage:
Type: unrestricted
Revision: 5:6ae3a402b9af
This revision can be installed: True
Times cloned / installed: 316

Contents of this repository

Name Description Version Minimum Galaxy Version
find structural variants 1.2.2 16.01

Variant Analysis - Tools for single nucleotide polymorphism data such as WGA