Repository realigner_target_creator
Name: realigner_target_creator
Owner: devteam
Synopsis: Realigner Target Creator for use in local realignment
Emits intervals for the Local Indel Realigner to target for cleaning.  Ignores
454 reads, MQ0 reads, and reads with consecutive indel operators in the CIGAR string.
Content homepage: https://www.broadinstitute.org/gatk/
Development repository: https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gatk/realigner_target_creator
Link to this repository: https://toolshed.g2.bx.psu.edu/view/devteam/realigner_target_creator/5b8eaae854da
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/realigner_target_creator
Type: unrestricted
Revision: 1:5b8eaae854da
This revision can be installed: True
Times cloned / installed: 2925
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_gatk_1_4 revision ec95ec570854 owned by devteam
Repository package_samtools_0_1_18 revision 171cd8bc208d owned by devteam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
gatk 1.4 package
samtools 0.1.18 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
for use in local realignment 0.0.4 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis