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Repository mimodd_snpeff
Name: mimodd_snpeff
Owner: wolma
Synopsis: SnpEff-dependent functionality of MiModD
These tools require SnpEff installed and MiModD configured to use it.
They enable the annotation of variants identified with the MiModD core
tools with functional effects.
Content homepage: mimodd.readthedocs.io
Development repository: https://github.com/wm75/mimodd_galaxy_wrappers
Link to this repository: https://toolshed.g2.bx.psu.edu/view/wolma/mimodd_snpeff/b6da1066b2fd
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/wolma/mimodd_snpeff
Type: unrestricted
Revision: 3:b6da1066b2fd
This revision can be installed: True
Times cloned / installed: 269

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
available for variant annotation with MiModD 0.1.9 16.01
with functional effects on genes and transcripts 0.1.9 16.01

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA
SAM - Tools for manipulating alignments in the SAM format
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data
Convert Formats - Tools for converting data formats
Visualization - Tools for visualizing data