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Repository ffp_phylogeny
Name: ffp_phylogeny
Owner: damion
Synopsis: calculating Feature Frequency Profiles (FFP) from fasta sequence and text data.
FFP (Feature frequency profile) is an alignment free comparison tool for phylogenetic analysis and text comparison. It can be applied to nucleotide sequences, complete genomes, proteomes and even used for text comparison. This tool calculates FFP on one or more fasta sequence or text datasets.  It prepares a mini pipeline consisting of [ffpry | ffpaa | ffptxt] > [ ffpfilt | ffpcol > ffprwn] > ffpjsd > ffptree .

The original command line ffp-phylogeny code is at http://ffp-phylogeny.sourceforge.net/ . This tool uses Aaron Petkau's modified version: https://github.com/apetkau/ffp-3.19-custom.
Link to this repository: https://toolshed.g2.bx.psu.edu/view/damion/ffp_phylogeny/79a4a86981d3
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/damion/ffp_phylogeny
Type: unrestricted
Revision: 3:79a4a86981d3
This revision can be installed: True
Times cloned / installed: 323
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Name Version Type
ffp-phylogeny 0.3.19_d4382db015acec0e5cc43d6c1ac80ae12cb7e6b3 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
An alignment free comparison tool for phylogenetic analysis and text comparison 0.1.04 any

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA