Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository suite_deeptools
Owner: bgruening
Synopsis: deepTools: User-friendly tools for the normalization, quality control and visualization of deep-sequencing data
deepTools address the challenge of visualizing the large amounts of data that
are now routinely generated from sequencing centers in a meaningful way. To do so,
deepTools contain useful routines to process the mapped reads data through removal of
duplicates and different filtering options to create coverage files in standard
bedGraph and bigWig file formats. deepTools allow the creation of normalized
coverage files or the comparison between two files (for example, treatment and control).

Finally, using such normalized and standardized files, multiple visualizations can be
created to identify enrichments with functional annotations of the genome.
For a gallery of images that can be produced and a description of the tools see http://f1000.com/posters/browse/summary/1094053

https://github.com/deeptools/deepTools
doi: 10.1093/nar/gku365
Wikipage: https://github.com/deeptools/deepTools/wiki

Repository-Maintainer: Björn Grüning

https://github.com/deeptools/deepTools
Type: unrestricted
Revision: 31:212c25ed876c
This revision can be installed: True
Times cloned / installed: 2285
Dependencies of this repository

Repository deeptools_bam_pe_fragmentsize revision 195e98217334 owned by bgruening
Repository deeptools_estimatereadfiltering revision bddbd9538b08 owned by bgruening
Repository deeptools_compute_matrix revision d9a637e83828 owned by bgruening
Repository deeptools_plot_coverage revision 9368fbc49c8b owned by bgruening
Repository deeptools_compute_gc_bias revision 5be24eba848d owned by bgruening
Repository deeptools_plot_profile revision 10301d137111 owned by bgruening
Repository deeptools_correct_gc_bias revision 5bffaa8354a1 owned by bgruening
Repository deeptools_plot_enrichment revision c03c3384cd81 owned by bgruening
Repository deeptools_plot_correlation revision 2c66e43f1c86 owned by bgruening
Repository deeptools_bigwig_average revision f6f246438eda owned by bgruening
Repository deeptools_plot_pca revision 00d869ea03a1 owned by bgruening
Repository deeptools_multi_bam_summary revision 1fcb7adc39b8 owned by bgruening
Repository deeptools_compute_matrix_operations revision 7ef978dc1b8a owned by bgruening
Repository deeptools_alignmentsieve revision 2b1413e30889 owned by bgruening
Repository deeptools_plot_fingerprint revision b88ebb3672a1 owned by bgruening
Repository deeptools_plot_heatmap revision 25d830337d31 owned by bgruening
Repository deeptools_bam_compare revision 29451af70c52 owned by bgruening
Repository deeptools_multi_bigwig_summary revision d9ce4897dbb2 owned by bgruening
Repository deeptools_bam_coverage revision 2d2cf5c1ea8a owned by bgruening
Repository deeptools_bigwig_compare revision 3d211717a775 owned by bgruening

Categories
ChIP-seq - Tools for analyzing and manipulating ChIP-seq data.
Convert Formats - Tools for converting data formats
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Visualization - Tools for visualizing data