Repository frogs_2_0_0
Name: frogs_2_0_0
Owner: frogs
Synopsis: Suite for metabarcoding
This is FROGS version 2.0.0 Galaxy Wrappers
FROGS: Find Rapidly OTUs through Galaxy Solution 
Authors:
Valentin Marcon (valentin.marcon[a]inra.fr)
Olivier Inizan  (olivier.inizan[a]inra.fr)
Laure Quintric (laure.quintric[a]ifremer.fr)
Patrick Durand (pgdurand[a]ifremer.fr)
Maria Bernard (maria.bernard[a]inra.fr)
GĂ©raldine Pascal (geraldine.pascal[a]inra.fr)
Type: unrestricted
Revision: 0:76c750c5f0d1
This revision can be installed: True
Times cloned / installed: 255

Contents of this repository

Name Description Version Minimum Galaxy Version
with bar plot and composition plot 1.0.0 16.01
Converts a FROGS BIOM in fully compatible BIOM. 1.1.0 16.01
Filters OTUs on several criteria. 1.3.0 16.01
distance matrix 1.0.0 16.01
Step 1 in metagenomics analysis: denoising and dereplication. 2.0.1 16.01
with richness plot 1.0.0 16.01
from 3 files: biomfile, samplefile, treefile 1.0.0 16.01
Converts a TSV file in a BIOM file. 2.0.0 16.01
Step 2 in metagenomics analysis : clustering. 2.3.0 16.01
of samples using different linkage methods 1.0.0 16.01
Step 4 in metagenomics analysis : Taxonomic affiliation of each OTU's seed by RDPtools and BLAST 0.8.0 16.01
Attribute reads to samples in function of inner barcode. 2.0.0 16.01
with heatmap plot and ordination plot 1.0.0 16.01
Process some metrics on clusters. 1.4.0 16.01
Process some metrics on taxonomies. 1.1.0 16.01
Converts a BIOM file in TSV file. 2.1.0 16.01
Reconstruction of phylogenetic tree 1.0.0 16.01
Normalize OTUs abundance. 2.0.0 16.01
perform Multivariate Analysis of Variance (MANOVA) 1.0.0 16.01
Step 3 in metagenomics analysis : Remove PCR chimera in each sample. 1.3.0 16.01

Categories
Metagenomics - Tools enabling the study of metagenomes