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Repository xcms_export_samplemetadata
Owner: lecorguille
Synopsis: [Metabolomics][W4M][LC-MS] XCMS R Package - Preprocessing - Get a sampleMetadata file
Part of the W4M project: http://workflow4metabolomics.org XCMS: http://www.bioconductor.org/packages/release/bioc/html/xcms.html Filtration and Peak Identification using xcmsSet function from xcms R package to preprocess LC/MS data for relative quantification and statistical analysis
Type: unrestricted
Revision: 9:94eb263cfab4
This revision can be installed: True
Times cloned / installed: 264

Repository README files - may contain important installation or license information

Changelog/News

Version 3.12.0+galaxy* - 03/03/2020

  • UPGRADE: upgrade the xcms version from 3.6.1 to 3.12.0 (see XCMS News)

Version 3.6.1.0 - 03/09/2019

  • UPGRADE: upgrade the xcms version from 3.4.4 to 3.6.1 (see XCMS News)

Version 3.4.3.0 - 08/02/2019

  • UPGRADE: upgrade the xcms version from 3.0.0 to 3.4.3

Version 3.0.0.0 - 08/03/2018

  • UPGRADE: upgrade the xcms version from 1.46.0 to 3.0.0. So refactoring of a lot of underlining codes and methods
  • IMPROVMENT: a new dedicated tool "xcms plot chromatogram" will allow you to get TIC and BPI of your raw data.
  • IMPROVMENT: the tool will now generate a sampleMetadata file if any was provided. It will be useful to add some further information for the normalization and statistics steps.

Version 1.0.1 - 13/02/2017

  • IMPROVMENT: the tool will now raise an error if a sample isn't describe in the sampleMetadata file

Version 1.0.0 - 03/02/2017

  • NEW: a new tool to merge individual xcmsSet outputs to be used by xcms.group
Dependencies of this repository

Repository no_unzip_datatype revision 7800ba9a4c1e owned by lecorguille
Repository rdata_xcms_datatypes revision 544f6d2329ac owned by lecorguille

Contents of this repository

Name Description Version Minimum Galaxy Version
which need to be filled with extra information 3.12.0+galaxy0 16.01

Categories
Metabolomics - Tools for use in the study of Metabolomics