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Repository spades_plasmidspades
Name: spades_plasmidspades
Owner: iuc
Synopsis: Extract and assembly plasmids from WGS data.
plasmidSPAdes is a pipeline for assembling plasmid data sets. Ihas the potential to massively increase the throughput of plasmid sequencing and to provide information about plasmids in thousands of sequenced bacterial genomes by re-assembling their genomes, identifying their plasmids and supplementing the corresponding GenBank entries with the plasmid annotations
Content homepage: https://github.com/ablab/spades
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/spades_plasmidspades/7bb235ff0746
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/spades_plasmidspades
Type: unrestricted
Revision: 8:7bb235ff0746
This revision can be installed: True
Times cloned / installed: 388

Contents of this repository

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Name Description Version Minimum Galaxy Version
extract and assembly plasmids from WGS data 3.15.5+galaxy1 20.01

Categories
Assembly - Tools for working with assemblies
RNA - Utilities for RNA
Metagenomics - Tools enabling the study of metagenomes