Repository megahit_contig2fastg
Name: megahit_contig2fastg
Owner: iuc
Synopsis: A subprogram within the Megahit toolkit for converting contigs to assembly graphs (fastg)
Contig2fastg is a subprogram within the MEGAHIT toolkit. It converts MEGAHIT's contigs (.fa) to assembly graphs (.fastg) that can be utilized for protein/peptide identification via graph2pro and can also be visualized via Bandage. MEGAHIT is a single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly.
Content homepage: https://github.com/voutcn/megahit/blob/master/tools/toolkit.cpp
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/megahit_contig2fastg
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/megahit_contig2fastg/4ec5b3777508
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/megahit_contig2fastg
Type: unrestricted
Revision: 2:4ec5b3777508
This revision can be installed: True
Times cloned / installed: 374

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
for converting MEGAHIT's contigs (.fa) to assembly graphs (.fastg) 1.1.3+galaxy1 16.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Assembly - Tools for working with assemblies
Metagenomics - Tools enabling the study of metagenomes