Repository berokka

Name: berokka

Owner: iuc

Synopsis: Berokka is used to trim, circularise, orient & filter long read bacterial genome assemblies.

Detailed description:

There is already a good piece of software to trim/circularise and orient genome assemblies called Circlator. Please try that first!
You should only try Berokka if...
1) You only have the contig files and do not have the corrected reads anymore.
2) Your contigs are simple cases with clear overhang and could be done manually with BLAST.
3) Circlator fails on your data even after troubleshooting.
Berocca is a brand of effervescent drink and vitamin tablets containing vitamin B and C. It is a popular cure for a hangover. A key role of the berokka tool is to remove the "overhang" that occurs at the ends of long-read assemblies of circular genomes.

Content homepage: https://github.com/tseemann/berokka

Development repository: https://github.com/galaxyproject/tools-iuc/blob/master/tools/berokka

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/berokka/18c0086450bb

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/berokka

Type: unrestricted

Revision: 2:18c0086450bb

This revision can be installed: True

Times cloned / installed: 268

Repository README files - may contain important installation or license information

Readme files

Galaxy Wrapper for Berokka

Trim, circularise, orient & filter long read bacterial genome assemblies.

Detailed Description

View original Berokka documentation here: https://github.com/tseemann/berokka/blob/master/README.md

License

GPLv3

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Berokka View tool metadata	Trim, circularise, orient and filter long read bacterial genome assemblies	0.2.3	19.01