Repository damidseq_polii_gene_call
Name: damidseq_polii_gene_call
Owner: mvdbeek
Synopsis: Rscript for calculating average PolII occupancy and FDR for RNA Pol II DamID datasets
Processing DamID-seq data involves extending single-end reads, aligning the
reads to the genome and determining the coverage, similar to processing
regular ChIP-seq datasets. However, as DamID data is represented as a log2
ratio of (Dam-fusion/Dam), normalisation of the sample and Dam-only control
is necessary and adding pseudocounts to mitigate the effect of background
counts is highly recommended.
Content homepage: https://github.com/owenjm/polii.gene.call
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/damidseq_polII_gene_call
Link to this repository: https://toolshed.g2.bx.psu.edu/view/mvdbeek/damidseq_polii_gene_call/83ca801f21f9
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/mvdbeek/damidseq_polii_gene_call
Type: unrestricted
Revision: 1:83ca801f21f9
This revision can be installed: True
Times cloned / installed: 250

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
from DamIDseq data 1.0.2 16.01

Categories
ChIP-seq - Tools for analyzing and manipulating ChIP-seq data.