Repository hivtrace
Name: hivtrace
Owner: nml
Synopsis: An application that identifies potential transmission clusters within a supplied FASTA file with an option to find potential links against the Los Alamos HIV Sequence Database.
Development repository: https://github.com/phac-nml/galaxy_tools/tree/tools/hivtrace
Link to this repository: https://toolshed.g2.bx.psu.edu/view/nml/hivtrace/948f307397ca
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/nml/hivtrace
Type: unrestricted
Revision: 2:948f307397ca
This revision can be installed: True
Times cloned / installed: 268
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_python_3_4 revision 20ecf5cd3c0e owned by iuc (prior install required)
Repository package_cmake_3_2_3 revision 1aea698a1c63 owned by iuc (prior install required)
Repository package_python_3_4_hyphy_python_0_1_3 revision 5c14a49141f0 owned by nml (prior install required)
Repository package_python_3_4_pysam_0_8_3 revision 085a17b297b1 owned by nml (prior install required)
Repository package_python_3_4_numpy_1_10_1 revision f182da2b1d78 owned by nml (prior install required)
Repository package_python_3_4_scipy_0_16 revision aaeb6262be47 owned by nml (prior install required)
Repository package_python_3_4_biopython_1_66 revision cb43753d0467 owned by nml (prior install required)
Repository package_python_3_4_bioext_0_17_3 revision 1ca9f5fd8b65 owned by nml (prior install required)
Repository package_python_3_4_cython_0_23_4 revision 52c11d398790 owned by nml (prior install required)
Repository package_python_3_4_fakemp_0_9_1 revision 13da2754601c owned by nml (prior install required)
Repository package_python_3_4_hppy_0_9_6 revision 46decde5b780 owned by nml (prior install required)
Repository package_python_3_4_hivclustering_1_2_3 revision eda1cbde6572 owned by nml (prior install required)
Repository package_tn93_1_0_2 revision e1abbe60f3d4 owned by nml (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_readline_6_2 revision 5313ca2fbce6 owned by iuc (prior install required)
Repository package_bzlib_1_0 revision af4887e1f595 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision 944f93d45594 owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)
Repository package_gdbm_1_11 revision ed2537bccffc owned by iuc (prior install required)
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_python_3_4 revision 20ecf5cd3c0e owned by iuc (prior install required)
Repository package_python_3_4 revision 20ecf5cd3c0e owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_python_3_4 revision 20ecf5cd3c0e owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_python_3_4 revision 20ecf5cd3c0e owned by iuc (prior install required)
Repository package_python_3_4_numpy_1_10_1 revision f182da2b1d78 owned by nml (prior install required)
Repository package_python_3_4 revision 20ecf5cd3c0e owned by iuc (prior install required)
Repository package_python_3_4_numpy_1_10_1 revision f182da2b1d78 owned by nml (prior install required)
Repository package_python_3_4 revision 20ecf5cd3c0e owned by iuc (prior install required)
Repository package_python_3_4_pysam_0_8_3 revision 085a17b297b1 owned by nml (prior install required)
Repository package_python_3_4_numpy_1_10_1 revision f182da2b1d78 owned by nml (prior install required)
Repository package_python_3_4_scipy_0_16 revision aaeb6262be47 owned by nml (prior install required)
Repository package_python_3_4_biopython_1_66 revision cb43753d0467 owned by nml (prior install required)
Repository package_python_3_4_six_1_10_0 revision 93036b19115a owned by nml (prior install required)
Repository package_python_3_4 revision 20ecf5cd3c0e owned by iuc (prior install required)
Repository package_python_3_4 revision 20ecf5cd3c0e owned by iuc (prior install required)
Repository package_python_3_4_cython_0_23_4 revision 52c11d398790 owned by nml (prior install required)
Repository package_python_3_4 revision 20ecf5cd3c0e owned by iuc (prior install required)
Repository package_python_3_4_cython_0_23_4 revision 52c11d398790 owned by nml (prior install required)
Repository package_python_3_4_hyphy_python_0_1_3 revision 5c14a49141f0 owned by nml (prior install required)
Repository package_python_3_4_fakemp_0_9_1 revision 13da2754601c owned by nml (prior install required)
Repository package_python_3_4 revision 20ecf5cd3c0e owned by iuc (prior install required)
Repository package_python_3_4_bioext_0_17_3 revision 1ca9f5fd8b65 owned by nml (prior install required)
Repository package_python_3_4_fakemp_0_9_1 revision 13da2754601c owned by nml (prior install required)
Repository package_python_3_4_hyphy_python_0_1_3 revision 5c14a49141f0 owned by nml (prior install required)
Repository package_python_3_4_hppy_0_9_6 revision 46decde5b780 owned by nml (prior install required)
Repository package_python_3_4_cython_0_23_4 revision 52c11d398790 owned by nml (prior install required)
Repository package_cmake_3_2_3 revision 1aea698a1c63 owned by iuc (prior install required)
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_libtool_2_4 revision 7f67694b167c owned by iuc (prior install required)
Repository package_python_3_4 revision 20ecf5cd3c0e owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
hivtrace 0.1.4 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
with options and commands 1.0.0 16.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis