Repository pynast
Name: pynast
Owner: qfab
Synopsis: PyNAST is a sequence aligner for adding new 16S rDNA sequences to existing 16S rDNA alignments - GVL
PyNAST (Python Nearest Alignment Space Termination) is a reimplementation of the NAST sequence aligner, which has become a popular tool for adding new 16s rDNA sequences to existing 16s rDNA alignments. This reimplementation is more flexible, faster, and easier to install and maintain than the original NAST implementation. PyNAST is built using the PyCogent Bioinformatics Toolkit.
Link to this repository: https://toolshed.g2.bx.psu.edu/view/qfab/pynast/17b2737094ce
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/qfab/pynast
Type: unrestricted
Revision: 3:17b2737094ce
This revision can be installed: True
Times cloned / installed: 476
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_numpy_1_8 revision 36659940cecb owned by qfab (prior install required)
Repository package_uclust_1_2_22q revision c0295ba21771 owned by qfab (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
pycogent 1.5.2 package
pynast 1.2.2 package
uclust 1.22.2 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
PyNAST is a reimplementation of the NAST sequence aligner for adding new 16S rDNA sequences to existing 16S rDNA alignments. 1.0 any

Categories
Metagenomics - Tools enabling the study of metagenomes