| This tool is part of the workflow **PAQmiR** for the *Prediction Annotation and Quantification of miRNA with miRDeep2
This module will use miRDeep2's prediction results to create new reference datasets (hairpin and mature) which can be used for the quantification and annotation of miRNAs. The two reference datasets will be created by combining the prediction results and the reference miRNA/hairpin provided. This module allow to implement the three strategies described in this publication : Annotation of the goat genome using next generation sequencing of microRNA expressed by the lactating mammary gland: comparison of three approaches. Mobuchon et al. BMC Genomics. 2015* Wrappers are the product of Valentin Marcon, Kevin Normand & Sylvain Marthey (Thanks to INRA Migale, IFB ressources & INRA GABI) |
hg clone https://toolshed.g2.bx.psu.edu/repos/smarthey/paqmir_postprocess_mirdeep2
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| filter and use the results of miRDeep2 to create new reference datasets for quantification and annotation steps | 1.0.0 | 16.01 | |